Science Spyglass
Development of potency assays for clinical studies on gene therapy candidates
Gene therapy has emerged as a promising and powerful treatment modality for numerous human diseases, with Adeno-Associated Virus (AAV) vectors recognized as some of the safest and most widely used delivery systems. For these complex biological medicines, where product testing poses unique challenges, potency assays play a critical role in clinical studies and drug licensing. Leveraging Axxam’s advanced technological platforms, these potency assays can be tailored to meet the specific requirements of various application fields, providing robust solutions to this critical step in the drug development process.
AAV vectors have been proven to be particularly successful in ophthalmology. In this field, Axxam has recently developed and validated on behalf of GenSight Biologics a potency assay* to support clinical studies of an AAV-based optogenetic drug, i.e. GS030-DP from GenSight Biologics, for visual restoration in patients with Retinitis Pigmentosa.
Explore more about gene therapy and potency assays in the expandable boxes below or scroll down to dive straight into our case study on a potency assay for Retinitis Pigmentosa gene therapy.
Gene therapy is a therapeutic strategy based on the modification of gene expression within target cells via the employment of viral or non-viral vectors. Up to date, most of the US Food and Drug Administration (FDA)-approved gene therapies are viral based (Wang et al., 2024 Signal Transduct Target Ther). The viral vector approach takes advantage of the natural ability of viruses to infect human cells. Viral pathological genetic sequences are replaced by the desired therapeutic genes and target cells are then infected with the modified viruses, leading to the incorporation of the therapeutic material into the nuclei (Ghoraba et al., 2022 Clin Ophthalmol).
Amongst the viral vectors studied and used for in-vivo gene therapy -which include adenovirus, retrovirus, lentivirus, and herpes simplex virus-, AAV vectors have attracted a significant amount of attention in the field, due to their broad tissue tropism, good safety profile and versatile manufacturing processes. In fact, AAVs are non-pathogenic, do not integrate into the host genome, can sustain long-term gene expression and are often inherently capable of efficient cellular entry thus enhancing transduction efficiency (Wang et al., 2024 Signal Transduct Target Ther).
Notably, the form of AAV used in gene therapy is not the wild-type but a recombinant one (rAAV), which lacks viral DNA and instead contains the recombinant DNA. This will persist as episome in the nucleus of transduced cells and will not be integrated into the host genome, thus it will be diluted over time as cells proliferate and will be eventually lost, which is ideal for some gene therapy applications (Naso et al., 2017 BioDrugs).
rAAVs have the potential to find several applications in the clinic and are currently being tested in clinical trials for a wide range of human diseases, spamming from ocular and neurological to metabolic, hematological, cardiovascular and oncogenic diseases (Wang et al., 2024 Signal Transduct Target Ther). Amongst them, ophthalmology is certainly the main application field of rAAVs. This is due to several reasons: the eye has special immune features that reduce AAV immunogenicity; the eye is small and compartmentalized, thus being easily accessible and requiring low rAAV doses; many ocular diseases are monogenic and thus are suitable for gene therapy.
Gene therapy for ocular diseases was approved by the FDA in 2017 to treat pediatric patients with an inherited retinal disease. Several studies are currently focusing on other possible gene therapies for a wide range of ocular diseases involving from the cornea to the retina (Wang et al., 2024 Signal Transduct Target Ther; Ghoraba et al., 2022 Clin Ophthalmol).
A specialized approach of gene therapy particularly used in the eye is optogenetics. It consists in delivering genetic information that encodes for light sensitive proteins to non-photoreceptor retinal neurons such as ganglion cells, making them sensitive to light stimulation and bypassing the photoreceptors (Ghoraba et al., 2022 Clin Ophthalmol). This strategy could improve vision in patients with Retinitis Pigmentosa (RP) or other inherited diseases where photoreceptors are damaged. The use of optogenetics to restore vision was initially proposed in 2006 by Pan and colleagues (Bi et al., 2006 Neuron). A decade later, the biopharma company GenSight Biologics developed GS030, an optogenetic treatment candidate combining an AAV2-based gene therapy (GS030-DP) with the use of light-stimulating goggles (GS030-MD). As described in the case study below, Axxam was involved in developing and validating the GS030-DP potency assay, as shown in Gael et al., 2018.
Download the poster on GS030-PD
When developing any kind of pharmaceutical, it is mandatory to establish its potency to comply with authorities’ regulations (e.g. FDA or European Medicines Agency, EMA). A potency assay is a quantitative measure of the biological activity of a drug; more specifically, it measures the ability of the product to elicit a specific response in a disease-relevant context. It is used to evaluate product features associated with its quality and manufacturing controls to assure product identity, purity, stability in all phases of clinical studies.
The first step in potency assay development is the choice of the best experimental method, which depends on the mechanism of action of the candidate product. Then, characteristics to be assessed through the assay are the followings: linearity, precision, accuracy, robustness, repeatability, specificity. In fact, potency assays should be able to detect small variations in drug product potency in a robust and specific manner, suitable to assess batch-to-batch variability and drug stability in long-term storage.
Such evaluations can be particularly challenging in case of biological medicines, such as cell and gene therapy medicinal products and tissue engineered products, which have nucleic acid, viral vectors, viable cells and tissues as starting material (Salmikangas et al., 2023 Front Med). For cells, viability and cell phenotype are important features but alone are not sufficient to address biological activity. For example, if cells are transduced with a viral vector, potency is related to the expression of the transgene but also depends on target cells and transduction efficiency in the cells. All these elements should be taken into consideration when developing potency assays.
Case study: development of a potency assay for the optogenetic gene therapy drug GS030-DP (GenSight Biologics)
GS030-Drug Product (DP), an optogenetic AAV-based gene therapy developed by GenSight Biologics to treat retinal degenerative diseases, entered clinical trials in 2018 as an investigational treatment for Retinitis Pigmentosa.
GS030-DP consists in an AAV vector and a transgene encoding for a mutant version of the algae red-shifted modified channelrhodopsin Chrimson fused to a fluorescent protein. This protein essentially localizes to the cell membrane of transduced cells, and upon light stimulation at a specific wavelength undergoes a conformational change and opens, leading to a fast, proton- and cation-driven inward current that triggers plasma membrane depolarization.
Axxam developed on behalf of GenSight Biologics a specific, robust and highly sensitive in-vitro potency assay* assessing GS030-DP biological function, i.e. light-induced depolarization of transduced cells, in 384-well miniaturized format. The so far developed method fulfilled all the parameters required by the European Medicine Agency guidelines (ICH), therefore it was suitable to support all the next steps of GS030 gene therapy, especially new batch release and stability studies. This also allowed GenSight to comply with regulatory requirements as it moves from early phases of clinical development to pivotal studies and ultimately to Biologics License and Marketing Authorization Applications (BLA/MAA) in RP and other diseases causing photoreceptor cell degeneration.
Assay principle and experimental workflow
After transduction of the AAV-Chrimson into a suitable cellular host, cells were loaded with a fluorescent membrane potential sensitive dye, then analyzed at the FLIPR kinetic plate reader (Molecular Devices), where light stimulation and fluorescence imaging were carried out in parallel. The obtained increase in dye fluorescence (which was proportional to the AAV-Chrimson functionality and MOI used) was utilized as a response value for AC50 determination and further assay validation. We are operating on multiple fronts.
Data analysis
Data were analyzed using the Maximum of Percentage Fluorescence changes (ΔF%, Max) as response value; the Z’ factor was used as an indicator of assay robustness, using not infected cells as MIN control and cells infected with AC100 concentration of GS030-DP as MAX control.
Results – assay feasibility
To identify the best infection protocol for GS030-DP, different conditions were tested: cell seeding density, cell line permissiveness (4 cell lines evaluated), transduction step, infection time, Multiplicity Of Infection (MOI) range.

More in detail, a vector carrying the target fused to a fluorescent protein was used and the best experimental conditions were identified by a preliminary microscopy-based evaluation of fluorescent cells; then, in parallel, the Chrimson target response was tested with the Membrane Potential dye assay, in order to assess the correct target functionality. These tests also provided preliminary information on the detection limit (the lowest amount of AAV necessary to obtain a response), range (interval between the upper and lower response of AAV, Signal-to-Noise), and specificity (absence of significant response in not-infected cells) of the assay, thus contributing to the choice of the best experimental conditions for further validation activities.
Results – assay validation
After identifying the best infection protocol to be used for the potency assay, we further demonstrated assay linearity by testing a full MOI DR both as undiluted or as diluted solution (1:2, 1:5, 1:10), in order to preliminarily evaluate if the generated assay could detect minor changes of batch potency (graph below on the left).
In addition, the so far generated AAV potency assay underwent a full characterization phase in which all the parameters required for the method validation were tested: detection limit, quantitation limit, linearity, range, robustness, repeatability, intermediate precision, specificity, and accuracy. Namely, the AAV was analyzed in full dose-response to assess its AC50 value and reproducibility among different days and different batches; in parallel, the Z’ factor was calculated to further confirm assay robustness (graph below on the right).


In addition, small deliberate variations (e.g. pre-culture cell confluency, cell detachment method, infection protocol steps, FLIPR instrument, etc.) were introduced, showing that the assay performance was not affected, both in terms of AC50 and Z’ factor (data not shown).
Results – clinical batch routine testing
To demonstrate that the AAV potency assay was fully eligible for Clinical Batches routine testing, a full dose-response of the Clinical Batch and Reference Batch was run in parallel; as internal control for assay robustness, the Z’ factor calculated on not-infected vs. AC100 of Reference Batch was determined as quality criteria. These results showed that the GMP tested Clinical Batch had similar AC50 value compared to the Reference batch. Moreover, the good assay performance and robustness fully validated the analytical method for future uses in new batch releases and stability studies.

*The assay, which was developed and validated on behalf of GenSight Biologics and funded by GenSight Biologics, is the property of GenSight Biologics.

“It was a pleasure to work with Axxam to develop a highly sensitive and specific potency assay for our candidate product. The assay has been validated across all key parameters and is robust and reproducible, thereby meeting key EMA ICH guidelines. This success allowed us to comply with regulatory requirements and will enable us to advance from early phase development towards pivotal studies.”
Scott Jeffers
Chief Technical Officer
GenSight Biologics
Axxam’s AAV-based gene therapy and potency assay capabilities
At Axxam, we offer a range of AAV-based gene therapy and potency assay capabilities to support clients’ research needs.
- Recombinant AAV design: our expertise in molecular biology allows us to design AAVs of any given serotype.
- Recipient cell line generation: a wide range of suitable recipient cell lines is available, along with the possibility to generate recombinant cells lines expressing any target of interest, if needed.
- Development and validation of a suitable cell-based assay for AAV-based drug discovery and development: our highly experienced cell biology unit has the expertise to setup cell-based assays for various disease areas and target classes (GPCRs, etc.), including those employing optogenetics. In fact, Axxam developed light-controlled functional assays using different readouts and detection systems, e.g. fluorescence plate reader, high content imaging and electrophysiology.
By leveraging our AAV-based gene therapy/potency assay capabilities, clients can benefit from our assay development and optimization expertise, advanced instrument platform, and screening and profiling options. We are committed to providing reliable and efficient potency assay services to support your research and drug development endeavors.
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Webinar “Spot the difference”: ophthalmology and potency assays for optogenetic gene therapy drugs
25 February 2025 – 16.00 CET / 10.00 ET / 07.00 PT
